Hotels in Lincoln County

Crow's Nest @ The Thistle Inn

Indulge in luxury at The Thistle Inn, Boothbay Harbor. Our expansive Inn Suite offers two floors of refined elegance for families and groups. Relax in the regal master bedroom or the spacious living area with a sleeper sofa. Enjoy coastal inspired décor and ample natural light. A fully equipped kitchen awaits culinary enthusiasts. Two twin beds ensure comfort for companions, with modern bathrooms for convenience. Experience extraordinary hospitality where every detail exceeds expectations.

Royal Comfort King Bed

Welcome to our newly upgraded Premium King Room at Flagship Inn & Suites, designed for comfort and style. This modern retreat features brand-new furnishings, a plush king bed, and a sleek walk-in shower. Located on the first or second floor, our smoke-free room includes complimentary continental breakfast, high-speed WiFi, a flat-screen TV, air conditioning, a microwave, mini-refrigerator, and a coffee maker. Experience contemporary elegance and thoughtful amenities for a relaxing stay.

Boothbay Harbor Ocean View Garden Suite!

Room 9 at Admiral's Quarters Inn – Cozy Harbor View Room in Boothbay Harbor Room 9 offers a private ground-floor entrance with no steps, stunning harbor views, and direct access to gardens. Relax on your private patio in Maine rockers, soak in the sea breeze, and watch harbor life. The room includes a queen bed, fireplace, mini fridge, and a compact bathroom. Perfect for a peaceful getaway. Book today for a charming stay in Boothbay Harbor, Maine!

2-Story Harbor View Suite King and Queen, Balcony

Admiral’s Quarters Room 12 is a unique 2-story suite with 2 bedrooms on separate levels and 3 private balconies, each with stunning harbor or ocean views. The queen bedroom is on the lower level; upstairs features a king bed, sitting area, fireplace, and a secret balcony with breathtaking views. Accessed via private outdoor stairs, this charming suite offers coastal character and a prime location in the heart of Boothbay Harbor.

Admiral’s Quarters 14 –Penthouse King Suite, VIEWS

Admiral’s Quarters Room 14 is a premium 2-room penthouse suite with stunning harbor, lighthouse, and ocean views. The king bedroom features a wall of windows, private balcony, and fireplace. A second room offers a twin trundle bed and built-in storage with a mini fridge. Enjoy a walk-in glass shower and two entrances—one private. Perfect for couples or small groups seeking a scenic, quiet retreat in Boothbay Harbor.

Main Inn Harbor View

This two-room two queen bed handicap accessible unit is located on the second floor (street level, no stairs) of our Main Inn Building with a private double balcony at the Tugboat Inn. Along with beautiful views of the harbor, we also have an onsite restaurant with all your seafood and land favorites! We are also walking distance from downtown Boothbay Harbor where you can enjoy many shops and restaurants.

Alyson's Room - Main House King, Ocean Views!

Bright and spacious, Greenleaf Inn Room 5 features ocean views, a king Helix mattress, smart-charging lamps, and a cozy reading chair. Enjoy personalized comfort with A/C, heat, and a ceiling fan. The large private bathroom includes plush towels and robes. Located in the main house, just a short walk to Boothbay Harbor’s shops, dining, and waterfront attractions—perfect for a peaceful Maine getaway.

More then a Motel with Garden

Welcome to our tranquil hotel with lush gardens and newly renovated rooms, offering a blend of modern comfort and style. Explore our town through our partnerships with a cozy coffee and bakery shop, a top-notch seafood and sushi restaurant, and an exclusive ice cream factory, all offering our guests special discounts. Experience hospitality intertwined with local flavors for an unforgettable stay.

GL4 | Corner King w/ Harbor & Island Views!

Relax in this bright, second-floor King room at the Greenleaf Inn with sweeping views of Boothbay Harbor and nearby islands. Enjoy a plush pillow-top bed, sitting area, closet, A/C, and ceiling fan. The private bath features a large shower, soft towels, and cozy robes. Located just steps from downtown shops, restaurants, and waterfront activities—perfect for a peaceful coastal getaway.

GL3 King Suite, Large Bath, Balcony, Harbor Views!

Spacious king room on the second floor with a private balcony overlooking Boothbay Harbor. Features a plush pillow-top king bed, dresser, closet, and a large private bathroom with a hand-painted ocean mural. Enjoy stunning harbor views, morning coffee on the balcony, and easy access to shops, dining, and waterfront activities—all from the comfort of the Greenleaf Inn.

Ocean Deck Rm | Lighthouse View | No Hidden Fees

Holland Room 2 honors Spruce Point’s legacy with serene ocean views and timeless style. Featuring two queen beds and a pine-paneled bath, this second-floor guestroom opens to an airy deck overlooking Burnt Island Lighthouse. French doors, curated décor, and cozy comforts make it perfect for friends or families seeking a coastal Maine experience with history.

Greenleaf Inn Room 2 - 2 Room King Suite, Balcony

Cozy and inviting, Greenleaf Inn Room 2 is a king suite on the first floor with stunning harbor views and a private balcony. Features include a king bed, sitting area, Smart TV, A/C, Wi-Fi, mini-fridge, and full bath with tub/shower. Just steps from downtown Boothbay Harbor’s shops, dining, and boat tours—perfect for a peaceful coastal getaway.